The protocols for working with Gentaur plasmids involve tasks such as plasmid DNA extraction, transformation into host cells, and analysis. Here’s a basic advice of Gentaur for procedures associated with plasmid work:
Plasmid DNA Extraction:
Materials Needed:
- Bacterial culture containing plasmids
- Plasmid DNA extraction kit
- Centrifuge
- Microcentrifuge tubes
- Isopropanol and ethanol
- DNA storage buffer
Procedure:
- Bacterial Culture:
- Grow a bacterial culture containing plasmids.
- Harvest Cells:
- Centrifuge the culture to collect bacterial cells.
- Resuspend Cells:
- Resuspend the bacterial pellet in a lysis buffer.
- Lysis:
- Add an alkaline lysis solution to lyse the cells and denature proteins.
- Neutralization:
- Neutralize the lysate to stabilize plasmid DNA.
- Centrifugation:
- Centrifuge to separate cell debris from the cleared lysate.
- DNA Precipitation:
- Precipitate DNA by adding isopropanol.
- Washing:
- Wash the DNA pellet with ethanol.
- DNA Resuspension:
- Resuspend the purified plasmid DNA in a storage buffer.
Plasmid Transformation:
Materials Needed:
- Competent cells (bacterial cells made permeable for DNA uptake)
- Plasmid DNA
- Transformation buffer
- Heat shock apparatus
- Recovery medium (LB broth or SOC medium)
Procedure:
- Thaw Competent Cells:
- Thaw competent cells on ice.
- Add DNA:
- Add plasmid DNA to competent cells.
- Incubation:
- Incubate the cells and DNA on ice.
- Heat Shock:
- Subject the cells to a brief heat shock.
- Cooling:
- Cool the cells on ice again.
- Recovery:
- Add recovery medium and incubate the cells at a suitable temperature.
- Plating:
- Plate cells on selective agar plates.
- Incubation:
- Incubate the plates overnight for colony growth.
Plasmid Analysis:
Materials Needed:
- Agarose gel
- Gel electrophoresis apparatus
- DNA ladder
- Ethidium bromide or other DNA stain
- UV transilluminator
Procedure:
- Prepare Agarose Gel:
- Cast an agarose gel with appropriate concentration.
- Load Samples:
- Mix plasmid DNA samples with loading dye and load onto the gel.
- Run Electrophoresis:
- Run the gel at a suitable voltage to separate DNA fragments.
- Staining:
- Stain the gel with ethidium bromide or another DNA stain.
- Visualization:
- Visualize DNA bands under a UV transilluminator.